Detailed information of SNP:
|
SNP ID:
sf0300813468(Gbrowse)
Chromosome: chr03 Position: 813468 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 82.56% | 17.44% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 476 | 51.47% | 48.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 64.17% | 35.83% |
| Tropical Japonica | 89 | 20.22% | 79.78% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300813468 | C->A | LOC_Os03g02330(LOC_Os03g02330.1) | Non-Synonymous SNP |