Detailed information of SNP:
|
SNP ID:
sf0300938245(Gbrowse)
Chromosome: chr03 Position: 938245 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1321 | 96.14% | 3.86% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 400 | 87.50% | 12.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 95.39% | 4.61% |
| Tropical Japonica | 64 | 57.81% | 42.19% |
| Japonica Intermediate | 54 | 81.48% | 18.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300938245 | A->C | INTERGENIC | None |