Detailed information of SNP:
|
SNP ID:
sf0301214621(Gbrowse)
Chromosome: chr03 Position: 1214621 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.15% | 40.85% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301214621 | C->T | LOC_Os03g02980(LOC_Os03g02980.1) | INTRON |
| sf0301214621 | C->T | LOC_Os03g02980(LOC_Os03g02980.2) | INTRON |