Detailed information of SNP:
|
SNP ID:
sf0301250508(Gbrowse)
Chromosome: chr03 Position: 1250508 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.76% | 48.24% |
| All Indica | 799 | 82.85% | 17.15% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301250508 | G->T | INTERGENIC | None |