Detailed information of SNP:
|
SNP ID:
sf0301283103(Gbrowse)
Chromosome: chr03 Position: 1283103 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.52% | 29.48% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 49.85% | 50.15% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301283103 | C->T | INTERGENIC | None |