Detailed information of SNP:
|
SNP ID:
sf0301311979(Gbrowse)
Chromosome: chr03 Position: 1311979 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 61.79% | 38.21% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301311979 | G->A | LOC_Os03g03120(LOC_Os03g03120.1) | Non-Synonymous SNP |