Detailed information of SNP:



SNP ID: sf0301336604(Gbrowse)

Chromosome: chr03

Position: 1336604
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1373 98.98% 1.02%
All Indica797 100.00% 0.00%
All Japonica460 96.96% 3.04%
Aus61 100.00% 0.00%
Indica I373 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica307 96.09% 3.91%
Tropical Japonica88 97.73% 2.27%
Japonica Intermediate65 100.00% 0.00%
Group VI/Aromatic13 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0301336604 C->A INTERGENIC None