Detailed information of SNP:
|
SNP ID:
sf0301336604(Gbrowse)
Chromosome: chr03 Position: 1336604 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 98.98% | 1.02% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 460 | 96.96% | 3.04% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 96.09% | 3.91% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301336604 | C->A | INTERGENIC | None |