Detailed information of SNP:
|
SNP ID:
sf0301360365(Gbrowse)
Chromosome: chr03 Position: 1360365 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 97.15% | 2.85% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 43.10% | 56.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301360365 | T->C | INTERGENIC | None |