Detailed information of SNP:
|
SNP ID:
sf0301363610(Gbrowse)
Chromosome: chr03 Position: 1363610 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 98.50% | 1.50% |
| All Indica | 779 | 97.43% | 2.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301363610 | A->C | LOC_Os03g03210(LOC_Os03g03210.1) | INTRON |