Detailed information of SNP:
|
SNP ID:
sf0301367202(Gbrowse)
Chromosome: chr03 Position: 1367202 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 89.91% | 10.09% |
| All Indica | 789 | 94.80% | 5.20% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 371 | 91.91% | 8.09% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301367202 | T->A | LOC_Os03g03210(LOC_Os03g03210.1) | Non-Synonymous SNP |