Detailed information of SNP:
|
SNP ID:
sf0301370525(Gbrowse)
Chromosome: chr03 Position: 1370525 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 95.46% | 4.54% |
| All Indica | 792 | 95.08% | 4.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301370525 | C->T | LOC_Os03g03220(LOC_Os03g03220.1) | Non-Synonymous SNP |