Detailed information of SNP:
|
SNP ID:
sf0301370738(Gbrowse)
Chromosome: chr03 Position: 1370738 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 81.48% | 18.52% |
| All Indica | 764 | 83.77% | 16.23% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 361 | 86.70% | 13.30% |
| Indica II | 199 | 82.91% | 17.09% |
| Indica Intermediate | 204 | 79.41% | 20.59% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301370738 | A->C | LOC_Os03g03220(LOC_Os03g03220.1) | Non-Synonymous SNP |