Detailed information of SNP:
|
SNP ID:
sf0301370769(Gbrowse)
Chromosome: chr03 Position: 1370769 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 69.41% | 30.59% |
| All Indica | 790 | 93.80% | 6.20% |
| All Japonica | 496 | 35.28% | 64.72% |
| Aus | 59 | 32.20% | 67.80% |
| Indica I | 369 | 90.79% | 9.21% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 45.51% | 54.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301370769 | A->G | LOC_Os03g03220(LOC_Os03g03220.1) | Synonymous |