Detailed information of SNP:
|
SNP ID:
sf0301372346(Gbrowse)
Chromosome: chr03 Position: 1372346 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 96.79% | 3.21% |
| All Indica | 781 | 94.62% | 5.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 363 | 92.56% | 7.44% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301372346 | G->A | LOC_Os03g03230(LOC_Os03g03230.1) | Synonymous |