Detailed information of SNP:
SNP ID:
sf0301467630(Gbrowse)
Chromosome: chr03 Position: 1467630 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1391 | 96.91% | 3.09% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 471 | 90.87% | 9.13% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 314 | 86.62% | 13.38% |
Tropical Japonica | 92 | 100.00% | 0.00% |
Japonica Intermediate | 65 | 98.46% | 1.54% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0301467630 | C->T | INTERGENIC | None |