Detailed information of SNP:
|
SNP ID:
sf0301473138(Gbrowse)
Chromosome: chr03 Position: 1473138 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 92.40% | 7.60% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 436 | 76.83% | 23.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 300 | 76.67% | 23.33% |
| Tropical Japonica | 76 | 76.32% | 23.68% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301473138 | T->C | INTERGENIC | None |