Detailed information of SNP:
|
SNP ID:
sf0301510073(Gbrowse)
Chromosome: chr03 Position: 1510073 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 76.40% | 23.60% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 490 | 46.53% | 53.47% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 328 | 54.27% | 45.73% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301510073 | A->G | INTERGENIC | None |