Detailed information of SNP:
|
SNP ID:
sf0301532587(Gbrowse)
Chromosome: chr03 Position: 1532587 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.85% | 42.15% |
| All Indica | 797 | 93.48% | 6.52% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301532587 | G->T | INTERGENIC | None |