Detailed information of SNP:
|
SNP ID:
sf0301546356(Gbrowse)
Chromosome: chr03 Position: 1546356 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 93.83% | 6.17% |
| All Indica | 790 | 89.75% | 10.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301546356 | C->A | INTERGENIC | None |