Detailed information of SNP:
|
SNP ID:
sf0301662423(Gbrowse)
Chromosome: chr03 Position: 1662423 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 77.57% | 22.43% |
| All Indica | 798 | 69.42% | 30.58% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 20.28% | 79.72% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301662423 | A->G | LOC_Os03g03720(LOC_Os03g03720.2) | INTRON |
| sf0301662423 | A->G | LOC_Os03g03720(LOC_Os03g03720.1) | INTRON |