Detailed information of SNP:
|
SNP ID:
sf0301665305(Gbrowse)
Chromosome: chr03 Position: 1665305 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.41% | 24.59% |
| All Indica | 799 | 65.83% | 34.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301665305 | C->A | INTERGENIC | None |