Detailed information of SNP:
|
SNP ID:
sf0301665498(Gbrowse)
Chromosome: chr03 Position: 1665498 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 74.86% | 25.14% |
| All Indica | 793 | 65.32% | 34.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 211 | 18.96% | 81.04% |
| Indica Intermediate | 208 | 64.42% | 35.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301665498 | A->G | INTERGENIC | None |