Detailed information of SNP:
|
SNP ID:
sf0301738682(Gbrowse)
Chromosome: chr03 Position: 1738682 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.47% | 8.53% |
| All Indica | 798 | 84.96% | 15.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301738682 | C->T | LOC_Os03g03860(LOC_Os03g03860.3) | Non-Synonymous SNP |
| sf0301738682 | C->T | LOC_Os03g03860(LOC_Os03g03860.1) | Non-Synonymous SNP |
| sf0301738682 | C->T | LOC_Os03g03860(LOC_Os03g03860.2) | Non-Synonymous SNP |