Detailed information of SNP:
|
SNP ID:
sf0301899947(Gbrowse)
Chromosome: chr03 Position: 1899947 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 96.71% | 3.29% |
| All Indica | 758 | 99.34% | 0.66% |
| All Japonica | 488 | 93.03% | 6.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 179 | 97.77% | 2.23% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301899947 | T->C | LOC_Os03g04150(LOC_Os03g04150.1) | INTRON |