Detailed information of SNP:
|
SNP ID:
sf0301925241(Gbrowse)
Chromosome: chr03 Position: 1925241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 98.30% | 1.70% |
| All Indica | 791 | 97.60% | 2.40% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301925241 | G->A | INTERGENIC | None |