Detailed information of SNP:
|
SNP ID:
sf0301927180(Gbrowse)
Chromosome: chr03 Position: 1927180 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 85.29% | 14.71% |
| All Indica | 783 | 83.01% | 16.99% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 363 | 83.47% | 16.53% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0301927180 | C->T | LOC_Os03g04195(LOC_Os03g04195.1) | UTR_5_PRIME |