Detailed information of SNP:
|
SNP ID:
sf0302038007(Gbrowse)
Chromosome: chr03 Position: 2038007 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.71% | 10.29% |
| All Indica | 799 | 84.61% | 15.39% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302038007 | C->A | INTERGENIC | None |