Detailed information of SNP:
|
SNP ID:
sf0302094269(Gbrowse)
Chromosome: chr03 Position: 2094269 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 60.01% | 39.99% |
| All Indica | 795 | 41.01% | 58.99% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 372 | 57.53% | 42.47% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302094269 | T->C | INTERGENIC | None |