Detailed information of SNP:
|
SNP ID:
sf0302111466(Gbrowse)
Chromosome: chr03 Position: 2111466 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1295 | 82.39% | 17.61% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 380 | 43.42% | 56.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 253 | 25.69% | 74.31% |
| Tropical Japonica | 79 | 88.61% | 11.39% |
| Japonica Intermediate | 48 | 62.50% | 37.50% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302111466 | G->A | INTERGENIC | None |