Detailed information of SNP:
|
SNP ID:
sf0302173049(Gbrowse)
Chromosome: chr03 Position: 2173049 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 60.31% | 39.69% |
| All Indica | 694 | 38.04% | 61.96% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 54 | 1.85% | 98.15% |
| Indica I | 303 | 55.12% | 44.88% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 178 | 39.89% | 60.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302173049 | C->T | INTERGENIC | None |