Detailed information of SNP:
|
SNP ID:
sf0302216182(Gbrowse)
Chromosome: chr03 Position: 2216182 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 71.68% | 28.32% |
| All Indica | 789 | 58.43% | 41.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 370 | 79.46% | 20.54% |
| Indica II | 211 | 14.69% | 85.31% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302216182 | A->G | INTERGENIC | None |