Detailed information of SNP:
|
SNP ID:
sf0302226244(Gbrowse)
Chromosome: chr03 Position: 2226244 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.11% | 8.89% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302226244 | G->A | LOC_Os03g04690(LOC_Os03g04690.1) | INTRON |
| sf0302226244 | G->A | LOC_Os03g04690(LOC_Os03g04690.2) | INTRON |