Detailed information of SNP:
|
SNP ID:
sf0302253072(Gbrowse)
Chromosome: chr03 Position: 2253072 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 77.04% | 22.96% |
| All Indica | 767 | 67.80% | 32.20% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 361 | 88.64% | 11.36% |
| Indica II | 205 | 25.37% | 74.63% |
| Indica Intermediate | 201 | 73.63% | 26.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302253072 | C->T | LOC_Os03g04720(LOC_Os03g04720.1) | INTRON |