Detailed information of SNP:
|
SNP ID:
sf0302257913(Gbrowse)
Chromosome: chr03 Position: 2257913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 67.73% | 32.27% |
| All Indica | 790 | 45.70% | 54.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 369 | 26.02% | 73.98% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 208 | 37.98% | 62.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302257913 | G->A | INTERGENIC | None |