Detailed information of SNP:
|
SNP ID:
sf0302285720(Gbrowse)
Chromosome: chr03 Position: 2285720 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 69.47% | 30.53% |
| All Indica | 750 | 48.13% | 51.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 340 | 24.71% | 75.29% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 200 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302285720 | T->C | LOC_Os03g04810(LOC_Os03g04810.1) | Non-Synonymous SNP |