Detailed information of SNP:
|
SNP ID:
sf0302285900(Gbrowse)
Chromosome: chr03 Position: 2285900 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 72.29% | 27.71% |
| All Indica | 769 | 57.61% | 42.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 362 | 71.82% | 28.18% |
| Indica II | 201 | 24.88% | 75.12% |
| Indica Intermediate | 206 | 64.56% | 35.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302285900 | G->A | LOC_Os03g04810(LOC_Os03g04810.1) | Non-Synonymous SNP |