Detailed information of SNP:
SNP ID:
sf0302285985(Gbrowse)
Chromosome: chr03 Position: 2285985 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1335 | 65.47% | 34.53% |
All Indica | 720 | 67.22% | 32.78% |
All Japonica | 497 | 70.22% | 29.78% |
Aus | 64 | 31.25% | 68.75% |
Indica I | 351 | 85.75% | 14.25% |
Indica II | 177 | 37.29% | 62.71% |
Indica Intermediate | 192 | 60.94% | 39.06% |
Temperate Japonica | 335 | 60.30% | 39.70% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 88.24% | 11.76% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0302285985 | A->G | LOC_Os03g04810(LOC_Os03g04810.1) | Synonymous |