Detailed information of SNP:



SNP ID: sf0302285985(Gbrowse)

Chromosome: chr03

Position: 2285985
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1335 65.47% 34.53%
All Indica720 67.22% 32.78%
All Japonica497 70.22% 29.78%
Aus64 31.25% 68.75%
Indica I351 85.75% 14.25%
Indica II177 37.29% 62.71%
Indica Intermediate192 60.94% 39.06%
Temperate Japonica335 60.30% 39.70%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 14.29% 85.71%
Intermediate40 47.50% 52.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0302285985 A->G LOC_Os03g04810(LOC_Os03g04810.1) Synonymous