Detailed information of SNP:
|
SNP ID:
sf0302285985(Gbrowse)
Chromosome: chr03 Position: 2285985 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 65.47% | 34.53% |
| All Indica | 720 | 67.22% | 32.78% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 64 | 31.25% | 68.75% |
| Indica I | 351 | 85.75% | 14.25% |
| Indica II | 177 | 37.29% | 62.71% |
| Indica Intermediate | 192 | 60.94% | 39.06% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302285985 | A->G | LOC_Os03g04810(LOC_Os03g04810.1) | Synonymous |