Detailed information of SNP:
|
SNP ID:
sf0302292720(Gbrowse)
Chromosome: chr03 Position: 2292720 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 59.99% | 40.01% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302292720 | C->T | INTERGENIC | None |