Detailed information of SNP:
SNP ID:
sf0302436926(Gbrowse)
Chromosome: chr03 Position: 2436926 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1409 | 89.07% | 10.93% |
All Indica | 791 | 81.04% | 18.96% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 66 | 96.97% | 3.03% |
Indica I | 372 | 70.43% | 29.57% |
Indica II | 209 | 90.43% | 9.57% |
Indica Intermediate | 210 | 90.48% | 9.52% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0302436926 | T->C | LOC_Os03g05020(LOC_Os03g05020.1) | INTRON |