Detailed information of SNP:
|
SNP ID:
sf0302492099(Gbrowse)
Chromosome: chr03 Position: 2492099 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 90.83% | 9.17% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 73.81% | 26.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 67.58% | 32.42% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302492099 | G->A | INTERGENIC | None |