Detailed information of SNP:
|
SNP ID:
sf0302504655(Gbrowse)
Chromosome: chr03 Position: 2504655 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 86.79% | 13.21% |
| All Indica | 744 | 76.75% | 23.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 356 | 73.31% | 26.69% |
| Indica II | 187 | 85.56% | 14.44% |
| Indica Intermediate | 201 | 74.63% | 25.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302504655 | A->T | INTERGENIC | None |