Detailed information of SNP:
|
SNP ID:
sf0302569580(Gbrowse)
Chromosome: chr03 Position: 2569580 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.55% | 39.45% |
| All Indica | 794 | 94.84% | 5.16% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302569580 | C->T | INTERGENIC | None |