Detailed information of SNP:
|
SNP ID:
sf0302580219(Gbrowse)
Chromosome: chr03 Position: 2580219 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.62% | 4.38% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 87.68% | 12.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302580219 | C->T | LOC_Os03g05320(LOC_Os03g05320.2) | UTR_5_PRIME |
| sf0302580219 | C->T | LOC_Os03g05320(LOC_Os03g05320.3) | UTR_5_PRIME |
| sf0302580219 | C->T | LOC_Os03g05320(LOC_Os03g05320.1) | UTR_5_PRIME |