Detailed information of SNP:
SNP ID:
sf0302608270(Gbrowse)
Chromosome: chr03 Position: 2608270 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1413 | 93.21% | 6.79% |
All Indica | 793 | 88.02% | 11.98% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 89.60% | 10.40% |
Indica II | 209 | 96.65% | 3.35% |
Indica Intermediate | 209 | 76.56% | 23.44% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0302608270 | C->T | LOC_Os03g05334(LOC_Os03g05334.1) | UTR_5_PRIME |