Detailed information of SNP:
|
SNP ID:
sf0302781586(Gbrowse)
Chromosome: chr03 Position: 2781586 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.35% | 41.65% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302781586 | A->G | INTERGENIC | None |