Detailed information of SNP:
|
SNP ID:
sf0302818000(Gbrowse)
Chromosome: chr03 Position: 2818000 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 68.14% | 31.86% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 487 | 15.61% | 84.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 326 | 22.39% | 77.61% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302818000 | G->A | LOC_Os03g05650(LOC_Os03g05650.1) | Non-Synonymous SNP |