Detailed information of SNP:
|
SNP ID:
sf0302836090(Gbrowse)
Chromosome: chr03 Position: 2836090 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 96.93% | 3.07% |
| All Indica | 690 | 94.20% | 5.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 321 | 92.21% | 7.79% |
| Indica II | 177 | 96.61% | 3.39% |
| Indica Intermediate | 192 | 95.31% | 4.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302836090 | C->T | LOC_Os03g05680(LOC_Os03g05680.1) | INTRON |