Detailed information of SNP:
|
SNP ID:
sf0302892739(Gbrowse)
Chromosome: chr03 Position: 2892739 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 98.98% | 1.02% |
| All Indica | 749 | 98.13% | 1.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 98.26% | 1.74% |
| Indica II | 205 | 97.56% | 2.44% |
| Indica Intermediate | 200 | 98.50% | 1.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0302892739 | A->C | INTERGENIC | None |