Detailed information of SNP:
|
SNP ID:
sf0303000251(Gbrowse)
Chromosome: chr03 Position: 3000251 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 83.47% | 16.53% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 470 | 53.19% | 46.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 35.78% | 64.22% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303000251 | A->G | INTERGENIC | None |