Detailed information of SNP:
|
SNP ID:
sf0303086397(Gbrowse)
Chromosome: chr03 Position: 3086397 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 56.51% | 43.49% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303086397 | G->A | INTERGENIC | None |